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What are the default settings? #574

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jiangzy26 opened this issue Sep 12, 2024 · 0 comments
Open

What are the default settings? #574

jiangzy26 opened this issue Sep 12, 2024 · 0 comments

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@jiangzy26
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Hi, I am using default settings to clean my PE reads using the following default settings: fastp -i Sample_raw_1.fq.gz -I Sample_raw_2.fq.gz -o Sample_clean_1.fq.gz -O Sample_clean_2.fq.gz, But I want to know what the default settings are, what will the command line do to my reads, like it will remove adapters, I am not sure others, could you share your help? Thank you very much.

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