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Is there MD tag in output of bwa? #418

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YuanHank opened this issue Apr 16, 2024 · 0 comments
Open

Is there MD tag in output of bwa? #418

YuanHank opened this issue Apr 16, 2024 · 0 comments

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@YuanHank
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Hi now I'm running same pipeline using chira, which is based on bwa alignment. Two pipeline use the same version of chira with different version of bwa. One using version 0.7.5a-r405,and another one using version 0.7.12-r1039. The ouput .bam file conduct MD tag on the version 0.7.12-r1039 but not on version 0.7.5a-r405. I wonder if this is nomal on version difference?

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