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195 Open 113 Closed
195 Open 113 Closed
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Issues list

out.hla.all - file format explained?
#168 opened Dec 12, 2017 by wjaratlerdsiri
bwakit not available for all releases
#167 opened Dec 5, 2017 by igordot
3
Linked HTML help is out of date
#159 opened Nov 1, 2017 by daveuu
No report for wrong fq file
#154 opened Sep 28, 2017 by hmyh1202
bwakit diff
#153 opened Sep 28, 2017 by lachlansimpson
Should it be 8 instead of 16
#151 opened Sep 1, 2017 by spikeliu
1
bwa mem: How to get a reference genome version from output bam file?
#147 opened Jul 31, 2017 by annam30
6
Memory overrun issue in bwasw (via valgrind)
#146 opened Jul 31, 2017 by jmarshall
Chimeric Read Tags: 1-based or 0-based positions?
#142 opened Jul 6, 2017 by dantaki
Undocumented -K
#140 opened Jun 30, 2017 by mmterpstra
TLEN reported by BWA MEM for some templates seems to be wrong
#137 opened Jun 25, 2017 by soumitrakp
3
The difference between SA and XA in the optional field
#136 opened Jun 21, 2017 by WortJohn
Can bwa mem or index run out memory when reading files which sizes are more than available RAM ?
#135 opened Jun 13, 2017 by ampawd
insertsize = 0 from bwa mem
#128 opened May 18, 2017 by JhinAir
Shared memory performance
#126 opened May 10, 2017 by kyleabeauchamp
6
Identifying Reads with Small Number of Multi-Mappers
#125 opened May 1, 2017 by imk1
Valid alignment dropped if extension crosses reference sequences in bwa mem
#124 opened Apr 30, 2017 by mvdbeek
Assertion in bntseq fails
#120 opened Apr 19, 2017 by ahwagner
12
pac2bwtgen error: Not enough space allocated to continue construction!
#119 opened Apr 7, 2017 by karel-brinda
How to fix a randomization seed while aligning reads?
#117 opened Mar 21, 2017 by ltnetcase
1
bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'
#114 opened Mar 13, 2017 by wangyugui
7
explanation of insert sizes from BWA-MEM
#113 opened Mar 7, 2017 by roblanf
18
bwa aln CL arguments from BAM @PG line output by samse
#107 opened Jan 30, 2017 by plijnzaad
alt alignments and supplementary records
#103 opened Jan 4, 2017 by mozack
Typo in README-alt.md file ?
#98 opened Nov 16, 2016 by alexey-larionov
1
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