ModuleNotFoundError BiopythonDeprecationWarning

[bai717273]

Expected Behavior

Current Behavior

I'm trying to run one protein sequence with 489 amino acids and repeatedly get the same error message (see the ColabFold output).
I know that the same type of error was reported end of jan 2024, but suggestions to overcome the problem that I found there
were not helpful in my case.

Steps to Reproduce (for bugs)

Please make sure to reproduce the issue after a "Factory Reset" in Colab.
If running locally ypdate you local installation colabfold_batch to the newest version.
Please provide your input if you can share it.

ColabFold Output (for bugs)

With ColabFold v1.5.5: AlphaFold2 using MMseqs2:
Cannot get through the following error message:

---

ModuleNotFoundError Traceback (most recent call last)

in <cell line: 7>()
5 import warnings
6 warnings.simplefilter(action='ignore', category=FutureWarning)
----> 7 from Bio import BiopythonDeprecationWarning
8 warnings.simplefilter(action='ignore', category=BiopythonDeprecationWarning)
9 from pathlib import Path

ModuleNotFoundError: No module named 'Bio'

---

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Context

One colleague told me that I need to check if Anaconda and Biopython are installen on my computer. Is this correct?

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used
• If you run it on a local system. Please add the server specifications
  People from the neighbour lab could run AlphaFold successfully, so I assume the server is not the problem.
• Operating system and version:
  Prozessor Intel(R) Core(TM) i5-9500 CPU @ 3.00GHz 3.00 GHz
  Installed RAM 8.00 GB
  System type 64-Bit-operation system, x64-based Prozessor

[bai717273]

Just one addition:
Operating system and version: Windows 10x64

[milot-mirdita]

Please use the Google Colab notebook at https://colabfold.com that does not require any installation.

Windows is not supported in any case for local installation.

[bai717273]

Thank you for your comment. I think, I found my mistake that happened by my trial to start the AlphaFold.
On my German Computer there is no such option like Runtime. I tried to start the process by clicking on Run AlphaFold knob.
Maybe it would be helpful if the user would be instructed a bit in more detaile, like:
"Runtime → Restart runtime that you find in the Main Menue Bar up high on this page"

Thank you and bye bye

bai717273