A collection of simple python tools for molecular biology and bioinformatics

GenBank DNA files parser with graphic user interface

Research project for the Breaker Lab

This repository contains the codes associated with the study "SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations". The first version of this work appeared on Research Square in November 2022 as preprint: https://doi.org/10.21203/rs.3.rs-2285898/v1

This is the repo for details regarding analysis of a shotgun metagenomic dataset for partial completion of a microbial sequence analysis course at CSU.

Currents scripts and pipeline used for counting GC3 on: 20 Lepidoptera species, 33 Hymenoptera species, 42 Diptera species and 15 Coleoptera species using ensemble DToL data

A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.

Small Long-read Assembler for Educational Purposes.

This repository contains all the code pertinent to our work "Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits." published in Frontiers in Genetics.

Project of ChIP-seq pipeline automatization for "Bioinformatics and Genomic Analysis" course at the University of Seville

Hands on bioinformatics workshops developed by the bioinformatics staff at Tufts University

MSA python project.

CWL for GDC SomaticSniper

Juan Villada - Personal Web Site

Exploratory analysis for donor-recipient whole genome sequences

Predict DNA annealing using a thermodynamics approach

Naive tool meant to detect novel splicing in RNA-Seq data

My magnum opus, or something

MASTERS is a general sequence-based MultiAgent System for protein TERtiary Structure prediction.