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1. gitter-lab/metl gitter-lab/metl Public

   Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

   Python 23 3

2. Reed-CompBio/spras Reed-CompBio/spras Public

   Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)

   Python 11 20

3. single-cell-pseudotime single-cell-pseudotime Public

   An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

   406 62

4. manubot/rootstock manubot/rootstock Public

   Clone me to create your Manubot manuscript

   HTML 453 177

5. gitter-lab/ssps gitter-lab/ssps Public

   Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

   Julia 14

6. gitter-lab/nn4dms gitter-lab/nn4dms Public

   Neural networks for deep mutational scanning data

   Jupyter Notebook 66 17