Pinned Loading

1. awesome-single-cell awesome-single-cell Public

   Forked from seandavi/awesome-single-cell

   Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

2. deeplearning-biology deeplearning-biology Public

   Forked from hussius/deeplearning-biology

   A list of deep learning implementations in biology

   1 1

3. leafcutter leafcutter Public

   Forked from davidaknowles/leafcutter

   Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

   R

4. polygenic-risk-scores polygenic-risk-scores Public

   Forked from pgormley/polygenic-risk-scores

   Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.

   Shell 1

5. Prepare a table annotations for huma... Prepare a table annotations for human genes using Bioconductor

   1

   # I am sure this can be done in a multiple of ways: but here's a nice example of use of Reduce for merging lists 

   2

   # This particular use case if when you are trying to make a look up table for Human genes

   3

   # Check out Marc Carlson's Annotationdbi packages and tutorials for alternative ways (SQL) of retrieving the information 

   4

   # Caution note:

   5

   # the unintended consequence of joining on the Entrez Gene ids is the Ensembl ids for alternative ids are lost and usually the 

6. Convert+xgmml+file+to+igraph+object.... Convert+xgmml+file+to+igraph+object.ipynb

   1

   {

   2

    "cells": [

   3

     {

   4

      "cell_type": "markdown",

   5

      "metadata": {},