MPI EVA Bioinformatics

Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology

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mapAD mapAD Public

An aDNA aware short-read mapper

Rust 19
mapping-iterative-assembler mapping-iterative-assembler Public

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

C 16 7
biohazard-tools biohazard-tools Public

Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

Haskell 7 1
network-aware-bwa network-aware-bwa Public

the Burrows Wheeler Aligner with networking capabilities

C 5 3
quicksand quicksand Public

A pipeline for the analysis of sedimentary ancient mtDNA

Nextflow 5 2
matchseq matchseq Public

Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

Perl 2 1

Repositories

quicksand Public
A pipeline for the analysis of sedimentary ancient mtDNA

mpieva/quicksand’s past year of commit activity

Nextflow 5 MIT 2 3 0 Updated Sep 26, 2024
mapAD Public
An aDNA aware short-read mapper

mpieva/mapAD’s past year of commit activity

Rust 19 MIT 0 0 0 Updated Sep 26, 2024
quicksand-build Public
The mpieva/quicksand helper pipeline

mpieva/quicksand-build’s past year of commit activity

Nextflow 0 MIT 0 0 0 Updated Sep 23, 2024
network-aware-bwa Public
the Burrows Wheeler Aligner with networking capabilities

mpieva/network-aware-bwa’s past year of commit activity

C 5 GPL-3.0 3 0 1 Updated Jun 8, 2022
biohazard Public
Udo Stenzel's biohazard — a Haskell library for bioinformatics [MIRROR]

mpieva/biohazard’s past year of commit activity

Haskell 0 BSD-3-Clause 0 0 0 Updated Apr 5, 2022
index_swapping Public
Perl script for identifying cross-contamination events that occurred between double-index libraries due to index swapping during library amplification or sequencing.

mpieva/index_swapping’s past year of commit activity

Perl 0 MIT 0 0 0 Updated Nov 5, 2021
biohazard-tools Public
Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

mpieva/biohazard-tools’s past year of commit activity

Haskell 7 BSD-3-Clause 1 0 0 Updated Mar 18, 2021
nuclear_sediment_pipeline Public
Scripts used within the sediment capture pipeline

mpieva/nuclear_sediment_pipeline’s past year of commit activity

Python 1 MIT 0 0 0 Updated Jan 26, 2021
matchseq Public
Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

mpieva/matchseq’s past year of commit activity

Perl 2 MIT 1 0 0 Updated May 15, 2020
swot Public Forked from JetBrains/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.

mpieva/swot’s past year of commit activity

Kotlin 0 MIT 23,214 0 0 Updated Apr 15, 2020