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Bioinformatics

Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

Here are 496 public repositories matching this topic...

FelixKrueger / Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bioinformatics dna methylation

Updated Sep 3, 2024
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openbiox / weekly

生信爱好者周刊（每周日发布）

bioinformatics weekly free-journals

Updated Oct 28, 2024
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Benjamin-Lee / deep-rules

Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
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biowasm / biowasm

WebAssembly modules for genomics

javascript bioinformatics genomics webassembly awk jq sed grep bedtools samtools bowtie2 minimap2 seqtk

Updated Nov 1, 2024
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linsalrob / ComputationalGenomicsManual

Robs manual for the computational genomics and bioinformatics class.

bioinformatics genomics online-class

Updated Nov 9, 2024
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mikelove / bioc-refcard

Bioconductor cheat sheet

bioinformatics r howto guide cheatsheet bioconductor rnaseq compbio microarray

Updated Aug 26, 2024
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ISUgenomics / bioinformatics-workbook

Bioinformatics Workbook repository

Updated Oct 15, 2024
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XSLiuLab / Workshop

课题组每周研讨会

data-science bioinformatics r workshop

Updated Apr 17, 2024
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openSNP / snpr

The sources of the openSNP website

rails bioinformatics open-science opensnp

Updated Oct 15, 2024
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MannLabs / alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

bioinformatics proteomics mass-spectrometry alphapept-ecosystem

Updated Apr 19, 2024
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shinyCircos

YaoLab-Bioinfo / shinyCircos

an R/shiny application for creation of Circos plot interactively

bioinformatics r shiny shiny-server circos circos-graphs

Updated Sep 25, 2022
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B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm

bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing

Updated Nov 5, 2024
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MaayanLab / biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

cloud bioinformatics rna-seq jupyter pipeline notebook systems-biology dcppc

Updated Aug 18, 2024
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Nesvilab / MSFragger

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

bioinformatics proteomics mass-spectrometry database-search

Updated Jun 20, 2024
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jminnier / STARTapp

The START App: R Shiny Transcriptome Analysis Resource Tool

visualization bioinformatics rna-seq r shiny transcriptome shiny-apps genome-biology

Updated Nov 11, 2020
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rajewsky-lab / openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

bioinformatics omics transcriptomics spatial-transcriptomics

Updated Oct 30, 2024
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alexcritschristoph / Qiime16sTutorial

A tutorial on methods of 16S analysis with QIIME 1

Updated Jul 26, 2019
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JEFworks-Lab / STalign

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

bioinformatics alignment diffeomorphism singlecell spatialtranscriptomics

Updated Dec 11, 2023
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genome / bfx-workshop

A course on genomics and bioinformatics from WU

bioinformatics dataviz genomics analysis biology sequencing dna alignment rnaseq rna single-cell atacseq scrna chipseq

Updated Nov 4, 2024
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bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
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Related Topics

genomics sequencing