C++ htslib/bwa-mem/fermi interface for interrogating sequence data

BWA-MEME: Faster BWA-MEM2 using learned-index

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Sentieon DNAseq

A pipeline to investigate horizontal gene transfer from NGS data

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

Installation and usage for various tools for cancer genomics

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

The DKFZ alignment workflow plugin originally developed at the eilslabs

Mapping using PCAP

vSNP -- validate SNPs

Collecting Genotypes from ENA and make their SNPs

JNI code for bwa mem

Small GATK alignment and variant calling pipeline using python

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.

The second part of https://github.com/npanuhin/BIOCAD

Multi-class classification of drug resistance in MTB clinical isolates