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htslib

Here are 35 public repositories matching this topic...

brentp / hts-python

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

python bioinformatics genomics sam fasta bam htslib

Updated Mar 3, 2017
Python

sethbrin / cpp-htslib

A wrapper of htslib

genomics cpp11 htslib

Updated May 2, 2017
C++

quinlan-lab / hts-python

pythonic wrapper for htslib

python bioinformatics genomics sam bam htslib

Updated Aug 8, 2017
Python

tt6746690 / htsget

A server implementation of htsget protocol

htslib samtools htsget

Updated Aug 25, 2017
C++

innovate-invent / bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression

hts sam bam htslib samtools bgzf bai

Updated Sep 15, 2018
Python

CHRUdeLille / bcftools_containers

bcftools singularity container

ngs next-generation-sequencing singularity vcf htslib singularity-containers vcftools bcftools singularity-hub

Updated Nov 8, 2018
Shell

YuzukiTsuru / TTS-Tools

Some useless thing for Speech Synthesis System

hmm hts speech-synthesis htslib htk

Updated Nov 21, 2018
C

aleighbrown / facets_snakemake

Pipeline for running the FACETS copy number caller using Snakemake

snakemake pipeline cancer htslib facets copy-number

Updated Mar 15, 2019
R

lindenb / x11hts

X11 related utilities for hts

visualization bioinformatics hts x11 sam bam htslib cnv

Updated May 10, 2019
C++

dantaki / sv2bed

Convert SV VCFs to BED, a wrapper for bcftools query

vcf htslib bcftools structural-variation

Updated Jul 20, 2019
Python

hiruna72 / htslib

[CMake build] C library for high-throughput sequencing data formats

android cmake armv7 htslib cross-compile armv8 android-cross-build

Updated Jan 15, 2020
C

hiruna72 / samtools

[CMake build] Tools (written in C using htslib) for manipulating next-generation sequencing data

android cmake armv7 htslib cross-compile armv8 samtools

Updated Jan 20, 2020
C

adamjorr / kbbq

reference-free base quality score recalibration

bioinformatics genomics htslib fastq kmers

Updated Oct 16, 2020
C++

Grelot / reserveBenefit--snpsdata_analysis

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

bash r genome container singularity python3 snp htslib bedtools samtools bwa-mem vcftools bcftools radseq reservebenefit

Updated Oct 30, 2020
Shell

lindenb / bcfselectgt

VCF/Bcf genotypes filtering using htslib

bioinformatics filter vcf htslib bcf

Updated Nov 18, 2020
C

biodata-fun / htslib_howto

Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

c bam-files sam htslib genomic-data-analysis vcf-files fastq-files sam-files cram-files

Updated Dec 11, 2020
C

brentp / hts-zig

ziglang + htslib

bioinformatics genomics zig htslib hacktoberfest ziglang

Updated Oct 31, 2021
Zig

rhpvorderman / htspy

Fast pythonic BAM processing according to the HTS format specifications..

python bam htslib

Updated Nov 10, 2022
C

Illumina / paragraph

Graph realignment tools for structural variants

vcf variant-calling htslib structural-variation genotyping

Updated Dec 8, 2022
C++

lindenb / rbcf

R Bindings for htslib/bcf

c bioinformatics r vcf htslib bcf

Updated Oct 4, 2023
C

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