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Area - Documentation 📒

Area - Out of core 💾Working with on disk dataWorking with on disk data

Enhancement ✨

Status: Open.

#3346 In scverse/scanpy;

· flying-sheep opened on Nov 8, 2024

scanpy installation on colab without any GPU's

Bug 🐛

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3345 In scverse/scanpy;

· CRISTIANJULIOCESAR opened on Nov 8, 2024

Cannot read Visium HD data using spatialdata-io (Recurrent error). Data is non-zarr format.

Bug 🐛

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3342 In scverse/scanpy;

· ankshe91 opened on Nov 6, 2024

Issues with reading in non zarr format Visium HD data in python

Bug 🐛

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3341 In scverse/scanpy;

· ankshe opened on Nov 5, 2024

Documentation typo for scanpy.pp.filter_cells

Status: Open.

#3332 In scverse/scanpy;

· fionaEyoung opened on Oct 30, 2024

ValueError: Output dtype not compatible with inputs.

Bug 🐛

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3331 In scverse/scanpy;

· ianfd opened on Oct 30, 2024

Feature Request: Option to Plot Highest Absolute Values on Top in sc.pl.umap

Area - Plotting 🌺

Enhancement ✨

Status: Open.

#3326 In scverse/scanpy;

· tobias-zehnder opened on Oct 25, 2024

scanpy.pl.stacked_violin - remove "marker label" whitespace if var_names is a list of genes

Area - Plotting 🌺

Bug 🐛

Status: Open.

#3320 In scverse/scanpy;

· adkinsrs opened on Oct 24, 2024

Multibatchnorm / between library batch normalization

Enhancement ✨

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3309 In scverse/scanpy;

· Marwansha opened on Oct 23, 2024

negative values after score_genes with log1P or counts layer

Status: Open.

#3297 In scverse/scanpy;

· Li-ZhiD opened on Oct 20, 2024

Gearys C and Morans I As Public API

Enhancement ✨

Status: Open.

#3291 In scverse/scanpy;

· ilan-gold opened on Oct 17, 2024

Plotting colors from obsm

Enhancement ✨

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

#3277 In scverse/scanpy;

· canergen opened on Oct 10, 2024