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Pull requests: scverse/scanpy

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Pull requests list

(feat): seurat v3 with dask Area - Out of core 💾 Working with on disk data Area – Performance 🐌 Area – Preprocessing 🧼
#3340 opened Nov 5, 2024 by ilan-gold • Draft
2 of 3 tasks
1.11.0
1
1
Actually working min-deps job Development Process 🚀
#3337 opened Nov 4, 2024 by flying-sheep Loading… 1.10.4
@flying-sheep
4
~ 35.63% faster filtering
#3330 opened Oct 29, 2024 by kaushalprasadhial • Draft
3 tasks
1
Remove calls to .format
#3325 opened Oct 25, 2024 by flying-sheep Loading… 1.10.4
1
Benchmark dask benchmark
#3319 opened Oct 24, 2024 by mikelkou Loading…
2
Fix zappy compatibility for clip_array
#3317 opened Oct 24, 2024 by flying-sheep Loading…
3 tasks
1.10.4
3
fix bug for partial_fit when the number of batch samples is less than n_comp
#3313 opened Oct 23, 2024 by DingWB Loading…
2 of 3 tasks
lets umap run in parallel
#3295 opened Oct 18, 2024 by Intron7 Loading…
1
21
Speedup (~20x) of scanpy.pp.regress_out function using Linear Least Square method.
#3284 opened Oct 15, 2024 by kaushalprasadhial Loading…
3 tasks
1.10.4
@Intron7
23
Update pyproject.toml
#3281 opened Oct 14, 2024 by Intron7 • Draft
1
scale function(_get_mean_var) updated for dense array, speedup upto ~4.65x
#3280 opened Oct 11, 2024 by kaushalprasadhial Loading…
@Intron7 @mikelkou
9
t-SNE optimization using scikit-learn-intelex
#3279 opened Oct 11, 2024 by kaushalprasadhial Loading…
2
Extending gex_only option to Visium function
#3278 opened Oct 11, 2024 by alexanderchang1 Loading…
3 tasks done
1
1
Add sanitize to score_genes
#3262 opened Sep 26, 2024 by flying-sheep • Draft
3 tasks
1
Less hacky plotting classes
#3209 opened Aug 13, 2024 by flying-sheep • Draft
9
Switch dendrogram implementation to aggregate
#3204 opened Aug 9, 2024 by flying-sheep • Draft
2 of 3 tasks
1
1
add layer argument for sc.tl.score_genes_cell_cycle
#3138 opened Jul 2, 2024 by shinthor • Draft
1 of 3 tasks
1.11.0
2
Speedup (~20x) of scanpy.pp.regress_out function using Linear Least Square method. benchmark
#3110 opened Jun 18, 2024 by ashish615 Loading…
3 tasks
@Intron7
24
scale function(_get_mean_var) updated for dense array, speedup upto ~4.65x benchmark
#3099 opened Jun 5, 2024 by ashish615 Loading… 1.10.4
@Intron7
26
Add str as a valid option for the save argument in scanpy.pl.rank_genes_groups
#3076 opened May 22, 2024 by JoshLoecker Loading…
1
Update ingest example. Fixes AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
#3075 opened May 22, 2024 by siebrenf Loading…
3 tasks done
1
2
t-SNE optimization using scikit-learn-intelex
#3061 opened May 14, 2024 by ashish615 Loading…
14
✨ Add colorblocks to baseplot similar to heatmap Area - Plotting 🌺
#3043 opened May 2, 2024 by mbuttner Loading…
2 tasks done
1
Start overhaul for embedding sort order Area - Plotting 🌺 Enhancement ✨
#2998 opened Apr 10, 2024 by ivirshup • Draft
20 tasks
1.11.0
1
1
parquet support for visium HD
#2992 opened Apr 9, 2024 by ktpolanski Loading…
1 of 3 tasks
1
5
ProTip! Exclude everything labeled bug with -label:bug.