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Issues list

Update ColabFold to use AlphaFold 2.3.0 to predict larger structures
#345 opened Dec 13, 2022 by tomgoddard
16 👍 8
AlphaFold2 protein embedding Notebook as example
#19 opened Aug 9, 2021 by ptynecki
2 👍 4
Documentation of values within sequence headers in a3m files
#304 opened Sep 15, 2022 by alex-hh
2 👍 4
--initial_guess feature
#432 opened Apr 6, 2023 by Poko18
3 👍 4
Running Alphafold using unpublished Pdb as a custom template
#334 opened Nov 25, 2022 by Shashankhare
👍 3
colabfold_batch options
#161 opened Feb 11, 2022 by xvazquezc
1 👍 2
Local Template Server
#430 opened Apr 4, 2023 by tsteternlieb
1 👍 2
Is it possible to get iPTM for pairs within a multimer?
#353 opened Jan 12, 2023 by Abhishaike
3 👍 1
[Feature Request] Option to specify template cutoff date
#365 opened Feb 1, 2023 by alirezaomidi
👍 1
Code for coloring by PAE
#264 opened Jul 9, 2022 by seanrjohnson
👍 1
Custom template per chain
#412 opened Mar 13, 2023 by Abhishaike
👍 1
Error when using --save-single or pair-representations argument : NoneType object is not subscriptable
#178 opened Mar 15, 2022 by bayarovici
1 👍 1
Instructions for generating pdb70_cif.ff{data,index}
#301 opened Sep 7, 2022 by danieldanciu
👍 1
Suggestion: make individual models immediately downloadable enhancement New feature or request good first issue Good for newcomers
#163 opened Feb 16, 2022 by tristanic
👍 1
Add a --version argument enhancement New feature or request good first issue Good for newcomers
#414 opened Mar 15, 2023 by jjv5
👍 1
Extremely slow expandaln step in colabfold_search
#621 opened May 9, 2024 by EvanKomp
👍 1
pdbfixer
#107 opened Nov 28, 2021 by brianlross
2 👍 1
MsaServer GET/template 400 error for colabfold batch use_templates=True
#559 opened Jan 23, 2024 by teodorpopescuQB
7 👍 1
Unrecognized HMM file format
#152 opened Feb 1, 2022 by hz42496
👍 1
mmseq database prep
#70 opened Nov 8, 2021 by listofdina
6
[RuntimeError: Resource exhausted] Upper-limit for protein length with Colab Pro?
#67 opened Nov 1, 2021 by sdtruong
1
How to dock peptide to protein with ColabFold
#64 opened Oct 25, 2021 by gundalav
5
MSA on local machine?
#650 opened Sep 9, 2024 by GXcells
multiple conformations?
#39 opened Sep 7, 2021 by blakely3dnm
Out of memory
#32 opened Aug 27, 2021 by 893932098
2
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