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Issues list

stuck in this process:2023-12-23 15:59:12,285 reranking models by 'plddt' metric 2023-12-23 15:59:14,218 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
#541 opened Dec 23, 2023 by llzzbest updated Nov 8, 2024
1
running on multiple gpus
#387 opened Feb 17, 2023 by groponp updated Nov 7, 2024
1
Local MSAServer installation error: databases/pdb70_a3m.ffdata: no such file or directory
#530 opened Dec 9, 2023 by serbulent-av updated Nov 7, 2024
4
403 Forbidden message from API
#658 opened Nov 5, 2024 by james-vincent updated Nov 6, 2024
4
MSA on local machine?
#650 opened Sep 9, 2024 by GXcells updated Nov 4, 2024
1
Both ColabFold notebook and localcolabfold cannot predict this sequence.
#657 opened Oct 29, 2024 by Huilin-Li updated Oct 29, 2024
Local generation of .m8 file causes wrong template selection in colabfold_batch
#580 opened Feb 29, 2024 by Nuta0 updated Oct 18, 2024
5
ColabFold process stuck in 'pending' state when using custom template and single sequence mode
#655 opened Oct 12, 2024 by mavericb updated Oct 12, 2024
AlphaFold2 protein embedding Notebook as example
#19 opened Aug 9, 2021 by ptynecki updated Oct 12, 2024
3
My mmCIF contains no mentioned error but the parsing still doesn't work
#654 opened Oct 11, 2024 by GGTuber updated Oct 11, 2024
error in running colab_batch for provided msa and templates
#653 opened Oct 6, 2024 by Lee951108 updated Oct 6, 2024
Issues using forked alphafold for modifed colabfold
#652 opened Oct 4, 2024 by michaelhla updated Oct 4, 2024
3
Installing dependencies throws error while loading conda entry point (Jupyter Notebook)
#651 opened Sep 23, 2024 by joel-wallace updated Sep 23, 2024
MMseq2 API error
#649 opened Sep 6, 2024 by GISTAL updated Sep 6, 2024
How to merge uniref30 database and general mmseqs databases by mmseqs createdb?
#648 opened Sep 6, 2024 by TheChosenOneJG updated Sep 6, 2024
evoformer embeddings
#586 opened Mar 15, 2024 by adrienchaton updated Sep 3, 2024
1
Empty hit_pdb files because of Error: Could not find CIFs
#647 opened Sep 3, 2024 by christophista updated Sep 3, 2024
Timing out when attempting to make a prediction?
#646 opened Aug 29, 2024 by rachitk updated Aug 30, 2024
4
colabfold_search failed on custom sequence database
#609 opened Apr 22, 2024 by qiyifei1 updated Aug 30, 2024
2
Timeout api.colabfold.com server
#606 opened Apr 17, 2024 by rukibuki updated Aug 29, 2024
15
Timeout while submitting to MSA server
#618 opened May 6, 2024 by zhangjuan233 updated Aug 29, 2024
7
Custom template issue
#644 opened Aug 21, 2024 by PDEPMC updated Aug 21, 2024
2
colabfold_search 1.5.5 names first sequence in .a3m file universally 101
#568 opened Feb 7, 2024 by wresch updated Aug 7, 2024
3
Keep Jax compiled
#130 opened Dec 21, 2021 by chris-kafka updated Aug 7, 2024
3
run prediction error
#643 opened Aug 6, 2024 by gmestrallet updated Aug 6, 2024
ProTip! Adding no:label will show everything without a label.