List of Computer Science courses with video lectures.

Conda recipes for the bioconda channel.

Data Apps & Dashboards for Python. No JavaScript Required.

Official git repository for Biopython (originally converted from CVS)

Data intensive science for everyone.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A DSL for data-driven computational pipelines

A curated list of awesome Bioinformatics libraries and software.

Aggregate results from bioinformatics analyses across many samples into a single report.

Single-cell analysis in Python. Scales to >1M cells.

Official code repository for GATK versions 4 and up

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Making Protein folding accessible to all!

C library for high-throughput sequencing data formats

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Unix, R and python tools for genomics and data science